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Recordsdata availability
Code availability
All source code for the Minigraph-Cactus pangenome pipeline, as neatly as free up binaries, Docker photos and particular person manuals, might perchance likely likely merely furthermore be stumbled on at https://github.com/ComparativeGenomicsToolkit/cactus.
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Acknowledgements
We thank A. D. Long for masses of solutions and insights in terms of the D. melanogaster recordsdata and the total vg team for his or her work to invent and dangle vg, upon which mighty of this work is dependent. B.P., A.N., J.M.E. and J.M. were partly supported by Nationwide Institutes of Health (NIH) grants R01HG010485, U24HG010262, U24HG011853, OT3HL142481, U01HG010961 (with H.L.) and OT2OD033761. H.L. became partly supported by NIH grant R01HG010040 and T.M. by U01HG010973. Computational infrastructure and toughen for working PanGenie were provided by the Centre for Recordsdata and Media Technology at Heinrich Heine University Düsseldorf.
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Hickey, G., Monlong, J., Ebler, J. et al. Pangenome graph constructing from genome alignments with Minigraph-Cactus.
Nat Biotechnol (2023). https://doi.org/10.1038/s41587-023-01793-w
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DOI: https://doi.org/10.1038/s41587-023-01793-w
